An Aurelian scientist is rescued by an allied submarine, the Naiad, with the help of Gryphus One, but the Naiad is later forced to surface after hitting a mine, however, Gryphus One stops the Naiad from hitting an iceberg and being sunk by enemy aircraft.
Gryphus One takes on the badly damaged Gleipnir, with its optical camouflage disabled and SWBM destroyed. At first, it uses conventional weapons, but later uses the Shock Cannon, however, Gryphus One is able to destroy the airborne fortress by targeting the Shock Cannon.
Gryphus One takes on a fully powered Gleipnir over Santa Elva in the process when the Gleipnir is destroying the allied ground forces rescued at Stand Canyon, destroying the optical camouflage system and SWBM ports, before the Gleipnir Captain intended to use the Shock Cannon on the city, but is destroyed in the process of descent into the city.
The Hamlet Unit, a biological warfare special forces unit, enters the city and releases the Cynocrine canisters into the city. Gryphus One neutralizes the toxic gas, letting citizens breath with fresh air. After that, the Hamlet Unit will escape and their CAS fighters were shot down by Gryphus One.
Gryphus One has to fly past an enemy radar network, patrol boats at the Raven Woods and the river before assaulting Sachana Air Base, destroying enemy aircraft, tanks and the Skylla Unit, an elite anti-air special forces unit.
Gryphus One prevents more transports from leaving Monte Breeze, but a group of resistance fighters calling themselves the "Aurelian Liberation Corps" tried to infiltrate the factories there, only to the squadron's horror that the factories are rigged with explosives. Gryphus One destroys all explosives and landmines in the factories and the ALC eventually learned of the explosives.
Gryphus One destroys the Nevera Jammer, despite the Skylla Unit destroys the transmission towers to the power plants that are provided energy to the high performance air defense system and attacking him.
Gryphus One leads the allied Victor Regiment into the Atmos Ring, isolating the city of Griswall from the outskirts and destroy enemy forces in an attempt to defend the capital, as well destroying the Meson Cannon. Then, the allied troops liberate Griswall by taking the enemy central command, the Gaiuss Tower.
The Aurelian Liberation Corps have found their way into the capital and have driven enemy forces out. Gryphus One is sent to destroy all enemy forces that are attempting to overrun the ALC and the defense perimeter, but the Skylla Unit appears and uses their M270 MLRS rocket launchers to fire MGM-140 ATACMS missiles to destroy the defense perimeter. As a result, Gryphus One shoots down all incoming missiles and the capital is liberated.
The High-Powered Microwave has already arrived at Archelon Fortress. In order to reduce its tracking potential, Gryphus One destroys Leasath's radar antennas surrounding Cobalt Cave, as well as the cave's underground control facility.
The High-Powered Microwave has been equipped on Leasath's Fenrirs. Despite the advanced weaponry, Gryphus One shoots down all four Fenrirs that took off from Archelon Fortress, as well as a Shock Cannon mounted to the top of the fortress.
Alect Squadron has taken command of Leasath's Fenrirs. Gryphus One shoots down all four Fenrirs that took off from Archelon Fortress, but a fifth Fenrir is about to take off. Gryphus One enters the fortress and destroys it within the tunnels, flying out on the other side before the fortress is destroyed.
The player single-handedly takes on all of the game's fictional aircraft, save for the Fenrir. The final targets are four ADF-01s and, depending on the circumstances, a Z.O.E. ADF-01 and a Scarface 1XFA-27.
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